Banner

Trans-eQTLs across different cancer types

In trans-eQTL analysis, we identified 231,210 eQTL−gene pairs at FDR < 0.05 in 33 cancer types for users to search or browse.

     

e.g., "PRAD"
e.g., "rs7231881"
e.g., "SMAD4"


     

Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-valule
Display
BLCA rs12001858 chr9:125037623 A/G FBXW2 chr9:123514256-123555690:- 0.55 6.1 2.64E-9 Box Plot
BLCA rs12001858 chr9:125037623 A/G SEC61B chr9:101984346-101992897:+ 0.44 5.99 4.8E-9 Box Plot
BLCA rs12005197 chr9:10785565 C/T CDC37L1 chr9:4679559-4708398:+ 0.65 6.53 2.14E-10 Box Plot
BLCA rs12019001 chr14:70618258 A/G NUMB chr14:73741815-73930348:- 0.62 6.44 3.62E-10 Box Plot
BLCA rs12019001 chr14:70618258 A/G PSEN1 chr14:73603126-73690399:+ 0.75 6.28 9.0E-10 Box Plot
BLCA rs12051649 chr17:18117529 C/G LOC162632 chr17:16614993-16707819:+ -0.43 -6.66 9.34E-11 Box Plot
BLCA rs12052795 chr2:30983696 A/G C6orf122 chr6:170188886-170198921:- 0.34 6.14 2.11E-9 Box Plot
BLCA rs12062618 chr1:121176815 C/T NBPF14 chr1:148003642-148025863:- 0.28 6.19 1.51E-9 Box Plot
BLCA rs12069385 chr1:35779988 C/T KRTAP13-1 chr21:31768392-31769140:+ 0.2 6.79 4.17E-11 Box Plot
BLCA rs12069545 chr1:121172203 A/G NBPF14 chr1:148003642-148025863:- 0.29 6.38 5.0E-10 Box Plot
BLCA rs12069911 chr1:35843814 A/C KRTAP13-1 chr21:31768392-31769140:+ 0.19 6.39 4.76E-10 Box Plot
BLCA rs12071156 chr1:35843870 T/G KRTAP13-1 chr21:31768392-31769140:+ 0.19 6.39 4.76E-10 Box Plot
BLCA rs12071847 chr1:121160324 C/A NBPF14 chr1:148003642-148025863:- 0.29 6.23 1.2E-9 Box Plot
BLCA rs12074524 chr1:35801763 G/C KRTAP13-1 chr21:31768392-31769140:+ 0.19 6.39 4.93E-10 Box Plot
BLCA rs12076601 chr1:35728743 A/G KRTAP13-1 chr21:31768392-31769140:+ 0.21 6.95 1.63E-11 Box Plot